[ensembl-dev] Ensembl Gene ID of Motif Feature

[Souhila Amanzougarene]

Hi Anja,

Thanks a lot for your response.

I understand. Yes, I wanted to get taget gene that is regulated by a 
given motif feature.

I have another question about the *motif score change,* I don't 
understand when can we say that the difference in motif scoreis high or 
low, is there a threshold ? How to interpret the negatif or positif 
diffeneces?


Best regards


Souhila

*
*

Le 29/04/2020 à 13:47, Anja Thormann a écrit :
> Dear Souhila,
>
> we don’t have any information about the gene that is regulated by a 
> given motif feature if that is what you were after. Please let me know 
> if that is not the case. VEP returns gene IDs for variants which 
> overlap transcripts.
>
> Best regards,
> Anja
>
>
>> On 27 Apr 2020, at 16:35, Souhila Amanzougarene 
>> <souhila.amanzougarene at cnrs.fr 
>> <mailto:souhila.amanzougarene at cnrs.fr>> wrote:
>>
>> Hi Ensembl Developers,
>>
>> I used VEP to annotate vcf files, I'm interested by the 
>> *MotifFeature*. In the annotated file, I have only the ensembl motif 
>> ID (Feature column).
>>
>> Is there any way to get gene ID in addition of the ensembl motif ID.
>>
>> Best regards
>>
>> -- 
>> Souhila Amanzougarene
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-- 
Souhila Amanzougarene

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