[ensembl-dev] Ensembl REST API | GET eqtl/tissue/:species/

[Ramiro Magno]

Awesome, thanks for the update!

On Wed, 6 Nov 2019 at 09:00, Daniel Zerbino <zerbino at ebi.ac.uk> wrote:

> Hello Ramiro,
>
> We have a test server up and running, just waiting for the green light to
> deploy onto production.
>
> Cheers,
>
> Daniel
> On 05/11/2019 19:47, Ramiro Magno wrote:
>
> Hi Daniel,
>
> No pressure intended... but how is it going? :)
>
> On Wed, 9 Oct 2019 at 15:58, Ramiro Magno <ramiro.magno at gmail.com> wrote:
>
>> Great, thanks for the update!
>>
>> On Wed, 9 Oct 2019 at 15:40, Daniel Zerbino <zerbino at ebi.ac.uk> wrote:
>>
>>> Hello Ramiro,
>>>
>>> We are *this* close to a release, hopefully less that 2 weeks away.
>>>
>>> Cheers,
>>>
>>> Daniel
>>> On 09/10/2019 15:02, Ramiro Magno wrote:
>>>
>>> Hi Thomas,
>>>
>>> Got any update on the new eQTL server: https://www.ebi.ac.uk/eqtl ?
>>>
>>> RM
>>>
>>> On Wed, 11 Sep 2019 at 17:22, Ramiro Magno <ramiro.magno at gmail.com>
>>> wrote:
>>>
>>>> Hi Thomas,
>>>>
>>>> Thank you for your quick response. Let's wait for that new service then!
>>>>
>>>> All the best,
>>>> Ramiro
>>>>
>>>>
>>>>
>>>> On Wed, 11 Sep 2019 at 17:05, Thomas Juettemann <juettemann at ebi.ac.uk>
>>>> wrote:
>>>>
>>>>> Hello Ramiro,
>>>>>
>>>>> Thanks for your message. I agree with your points. The eQTL adaptor
>>>>> was the first endpoint that I created, certainly room for improvement. ;-)
>>>>>
>>>>> eQTLs are moving to a different team, and a new dedicated eQTL server
>>>>> is work in progress, The beta server  should be available in latest a month
>>>>> at this URL:
>>>>> https://www.ebi.ac.uk/eqtl
>>>>> It is currently returning 404, but will be active soon. There will be
>>>>> a new API for you to play with if you are interested.
>>>>>
>>>>> For that reason we will not expand these endpoints further, I hope
>>>>> that makes sense.
>>>>>
>>>>> Thank you for going through them in such detail, that is much
>>>>> appreciated.
>>>>> Please let me know if you have any further questions.
>>>>>
>>>>> All the best,
>>>>> Thomas
>>>>>
>>>>>
>>>>> On 11 Sep 2019, at 12:00, Ramiro Magno <ramiro.magno at gmail.com> wrote:
>>>>>
>>>>> Hi Devs,
>>>>>
>>>>> I have a few questions about the endpoint "eqtl/tissue/:species/".
>>>>>
>>>>> Q1: The doc (https://rest.ensembl.org/documentation/info/tissues <
>>>>> https://rest.ensembl.org/documentation/info/tissues>) indicates that
>>>>> there are no required parameters but that is a mistake, right? It always
>>>>> needs the species name, correct?
>>>>>
>>>>> Q2: Can I use this endpoint with other species than human? I tried
>>>>> with ovis_aries and capra_hircus but got a funny error: "error: No EQTL
>>>>> adaptor available".
>>>>>
>>>>> Q3: About the json output, the json is a list key/value pairs, with
>>>>> tissue name being the key and value being (always?) 1. Can the value in any
>>>>> circumstance be different from 1? If not, may I ask why this specific
>>>>> design choice? Why not simply return an array of tissue names?
>>>>>
>>>>> As always, many thanks in advance, Ramiro Magno
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>>>>
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