[ensembl-dev] Missing Swissprot IDs in Biomart

[Mark McDowall]

Hi Beat,

If you are referring to the ID V9GXZ4 this has come from the UniProtKB/TrEMBL set rather than UniProtKB/Swiss-Prot. If you 
modify the BioMart Attributes to also include "UniProtKB/TrEMBL" then you will get matching ID.

Hope this helps,

Mark

On 16/03/2019 12:23, Wolf Beat wrote:
> Hi,
> 
> 
> i noticed that for some genes, the swissprot IDs are present on the website, but not in biomart.
> 
> Here is an example:
> 
> https://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000259030;r=1:74198235-74543982;t=ENST00000557284
> 
> 
> When looking this up in biomart, there is no swissprot:
> 
> http://www.ensembl.org/biomart/martview/a41095954feea366c537d0257259ea95?VIRTUALSCHEMANAME=default&ATTRIBUTES=hsapiens_gene_ensembl.default.feature_page.ensembl_transcript_id|hsapiens_gene_ensembl.default.feature_page.uniprotswissprot|hsapiens_gene_ensembl.default.feature_page.external_transcript_name|hsapiens_gene_ensembl.default.feature_page.ensembl_gene_id|hsapiens_gene_ensembl.default.feature_page.external_gene_name&FILTERS=hsapiens_gene_ensembl.default.filters.external_gene_name."FPGT-TNNI3K"&VISIBLEPANEL=resultspanel
> 
> 
> Is there any reason for this?
> 
> 
> Kind regards
> 
> 
> Beat Wolf
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-- 
Mark McDowall, PhD | Bioinformatician, Ensembl - Multiscale Genomics
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
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