[ensembl-dev] Missing Swissprot IDs in Biomart

Wolf Beat Beat.Wolf at hefr.ch
Sat Mar 16 12:23:42 GMT 2019


Hi,


i noticed that for some genes, the swissprot IDs are present on the website, but not in biomart.

Here is an example:

https://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000259030;r=1:74198235-74543982;t=ENST00000557284


When looking this up in biomart, there is no swissprot:

http://www.ensembl.org/biomart/martview/a41095954feea366c537d0257259ea95?VIRTUALSCHEMANAME=default&ATTRIBUTES=hsapiens_gene_ensembl.default.feature_page.ensembl_transcript_id|hsapiens_gene_ensembl.default.feature_page.uniprotswissprot|hsapiens_gene_ensembl.default.feature_page.external_transcript_name|hsapiens_gene_ensembl.default.feature_page.ensembl_gene_id|hsapiens_gene_ensembl.default.feature_page.external_gene_name&FILTERS=hsapiens_gene_ensembl.default.filters.external_gene_name."FPGT-TNNI3K"&VISIBLEPANEL=resultspanel


Is there any reason for this?


Kind regards


Beat Wolf



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