[ensembl-dev] Ensembl VEP 97 - project MANE

[Emily Perry]

Hi Bara

Unfortunately we failed to include the MANE annotation in the e97 caches. You can get them if you use the database rather than the cache and we will ensure they end up in the e98 caches.

All the best

Emily

> On 9 Aug 2019, at 08:26, Honysová, Barbora <Barbora.Honysova at gennet.cz> wrote:
> 
> Dear colleagues,
> 
> I would need to receive MANE matched transcripts for our data by using VEP97. If I use option --mane (field MANE in output ) or --merged (field REFSEQ_MATCH) the output is "-". I am pretty sure about the used used genes which are in the joint list of RefSeq and Ensembl where the match should be present.
> Do I need another annotation file for that or how can I obtain that information?
> 
> Thanks in advance.
> 
> Bara
>  
> Ing. Barbora Honysová
> Odborný VŠ pracovník - bioinformatik
> GENNET, s.r.o.
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--
Dr Emily Perry (Pritchard)
Ensembl Outreach Project Leader 
(she/her)

European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory 
Wellcome Genome Campus
Hinxton
Cambridge
CB10 1SD
UK 

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