[ensembl-dev] Finding Uniprot IDs based on Transcript IDs

[Animesh Sharma]

Dear Sara,

You can also query the UniProt and get back a hit, taking your example,
https://www.uniprot.org/uniprot/?query=ENST00000256078%20&sort=score&columns=id&format=tab
gives back  P01116.

Regards,

Ani


--------------------------"The Answer Lies In The
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-rms

On Mon, Sep 3, 2018 at 12:17 PM, Kieron Taylor <ktaylor at ebi.ac.uk> wrote:

> Dear Sara,
>
> Apologies that your request for help got overlooked for a few weeks.
>
> Start with this: http://rest.ensembl.org/xrefs/id/ENST00000256078?content-
> type=application/json&all_levels=1&external_db=Uniprot/SWISSPROT
>
> If you do not use the external_db parameter, then you get all linked
> external IDs and can filter them yourself. Please note that the two IDs you
> were seeking are from Ensembl's perspective in two separate databases,
> Uniprot/SWISSPROT and Uniprot/SPTREMBL . Uniprot doesn't really use these
> terms any more, but it's not easy for us to change this part of our
> annotation import.
>
> Hope that helps you or somebody else with a similar question. Remember to
> respect our rate limiter [1]
>
> Regards,
>
> Kieron
>
>
> Kieron Taylor PhD.
> Ensembl Developer
>
> EMBL, European Bioinformatics Institute
>
>
> [1] https://github.com/Ensembl/ensembl-rest/wiki/Rate-Limits
>
>
> > On 10 Aug 2018, at 15:50, Sara Arabyarmohammadi <sxa681 at case.edu> wrote:
> >
> > Hi,
> > I need to have a URL (a service location) to map Transcript Ids to
> corresponding Uniprot IDs programmatically using java.
> >
> > For example I want to input ENST00000256078 and receive back L7RSL8 and
> P01116.
> >
> > Can anybody help me find the Url to build the URL connection?
> >
> > Thanks,
> > Sara
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