[ensembl-dev] Variant sets

[Laurent Gil]

Dear Fin,

Thank you for reporting these issues:

1) This release we changed the structure of the Ensembl Variation web 
documentation, with new URLs. We tried to update all the links to the 
old web documentation but, obviously we missed this one! This will be 
fixed for the next release.
2) We just added this variation set this release but we made a mistake 
when we setup the link to the shortname of the gnomAD variation set. We 
apologise for this issue and this will be fixed in the next Ensembl 
release, this fall.

Best regards,

Laurent

On 31/07/2018 14:09, Fin Swimmer wrote:
> Hello all,
>
> i would like to fetch all variants that are listed in gnomAD and 
> overlap a given region via REST-Api. This should work with overlap 
> endpoint and "variation" as "feature".
>
> The variant_set option should enable me to select gnomAD variants. But:
>
> 1. The link on the help page 
> (http://rest.ensembl.org/documentation/info/overlap_id) to the short 
> names is wrong.
> It linkes to 
> http://www.ensembl.org/info/genome/variation/data_description.html#variation_sets 
> but shouldn't it be 
> http://www.ensembl.org/info/genome/variation/species/sets.html?
> 2. The listed shortname for gnomAD is NON_SYNONYMOUS_CODING which 
> looks strange and doesn't work.
>
> What's going on here?
>
>
> fin swimmer
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