[ensembl-dev] Variant sets

Fin Swimmer ensembl at need-login.de
Tue Jul 31 14:09:18 BST 2018


Hello all,

i would like to fetch all variants that are listed in gnomAD and overlap 
a given region via REST-Api. This should work with overlap endpoint and 
"variation" as "feature".

The variant_set option should enable me to select gnomAD variants. But:

1. The link on the help page 
(http://rest.ensembl.org/documentation/info/overlap_id) to the short 
names is wrong.
It linkes to 
http://www.ensembl.org/info/genome/variation/data_description.html#variation_sets 
but shouldn't it be 
http://www.ensembl.org/info/genome/variation/species/sets.html?
2. The listed shortname for gnomAD is NON_SYNONYMOUS_CODING which looks 
strange and doesn't work.

What's going on here?


fin swimmer



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