[ensembl-dev] Variant sets
Fin Swimmer
ensembl at need-login.de
Tue Jul 31 14:09:18 BST 2018
Hello all,
i would like to fetch all variants that are listed in gnomAD and overlap
a given region via REST-Api. This should work with overlap endpoint and
"variation" as "feature".
The variant_set option should enable me to select gnomAD variants. But:
1. The link on the help page
(http://rest.ensembl.org/documentation/info/overlap_id) to the short
names is wrong.
It linkes to
http://www.ensembl.org/info/genome/variation/data_description.html#variation_sets
but shouldn't it be
http://www.ensembl.org/info/genome/variation/species/sets.html?
2. The listed shortname for gnomAD is NON_SYNONYMOUS_CODING which looks
strange and doesn't work.
What's going on here?
fin swimmer
More information about the Dev
mailing list