[ensembl-dev] Fwd: Rest API problem: variant records not working for some ids like rs730880918

[Andrew Parton]

Hi Natàlia

Thank you for this. In this particular instance, it looks like the ensembl API is having trouble with the associated RefSeq transcript NM_000257, preventing Variant Recoder from returning a sensible result. We’re currently looking into it.

Do you know of other rsIDs where you’re seeing the same issue? This might help our debugging process.

Kind Regards,
Andrew


> On 18 Jul 2018, at 10:29, Natàlia Padilla Sirera <padilla.sirera at gmail.com> wrote:
> 
> 
> 
> Dear Sir or Madame, 
> 
> First of all, thanks for all your hard work in making Ensembl work. I would like to ask about the behaviour of the REST API. Since I tried to download some of the variants_records and is failing in some of the rsIDs like rs730880918. I tried these commands and none work. How should I do it?
> 
> wget -q --header='Content-type:application/json' 'http://rest.ensembl.org/variant_recoder/human/rs730880918?'  -O -
> 
> wget  -q --header='Content-type:application/json' --header='Accept:application/json' --post-data='{ "ids" : ["rs730880918"] }' 'http://rest.ensembl.org/variant_recoder/homo_sapiens'  -O -
> 
> Thanks,
> 
> Natàlia
> 
>     Natàlia Padilla Sirera
> LinkedIn | ResearchGate | ORCID 
> 
> Translational Bioinformatics
> Vall d'Hebron Institut de Recerca (VHIR)
> 
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> -- 
>     Natàlia Padilla Sirera
> LinkedIn | ResearchGate | ORCID 
> 
> Translational Bioinformatics
> Vall d'Hebron Institut de Recerca (VHIR)
> 
> Mòdul VHIR
> Paseig de la Vall d'Hebron 119-129
> 08035 Barcelona, Spain
> +34 934894101 ext 2688
> www.vhir.org
> 
> This message and any attachments included are confidential and intended for the recipient only. If you are not the intended recipient of this message, please notify the sender immediately, and delete the message and any attachments. Any disclosure, reproduction or distribution of this message or any attachments is prohibited.
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