[ensembl-dev] Ensembl Mirror Install - BioMart Installation

Rehaman ensemblfan at gmail.com
Thu Jan 11 06:47:23 GMT 2018


Dear Ensembl team,

Thanks a lot for quick response.

I have one more question.
Could you please let me know how to update our private server for next
Ensembl's release.

Thanks & Regards
Fazulur Rehaman

Thanks & Regards
Fazulur Rehaman

On Wed, Jan 10, 2018 at 4:40 PM, Matthew Laird <lairdm at ebi.ac.uk> wrote:

> Hello Rehaman,
>
> Unfortunately I think you've misunderstood what the installation
> instructions are trying to say. We no longer recommend the local
> installation of BioMart as part of a local mirror, and when the
> documentation says to link to a public BioMart, it means to run your
> queries against a public BioMart and Ensembl database. There isn't a way to
> have our public BioMart instances talk to your private server. If you need
> to do large queries against a local Ensembl mirror, you're better off using
> the API in that case.
>
> Please let us know if you have any further questions. Cheers.
>
>
> On 10/01/18 10:46, Rehaman wrote:
>
> Dear Team,
>
> We are configuring Ensembl mirror locally in our environment as per
> instructions.
> Now we need to install BioMart. In Documentation, It is saying that it is
> not recommended to install.
>
> Could you please let us know the process of linking public BioMart.to
> ensembl local server?
>
> Thanks in advance
> Rehaman
>
>
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