[ensembl-dev] Ensembl Mirror Install - BioMart Installation

Matthew Laird lairdm at ebi.ac.uk
Wed Jan 10 13:40:41 GMT 2018


Hello Rehaman,

Unfortunately I think you've misunderstood what the installation 
instructions are trying to say. We no longer recommend the local 
installation of BioMart as part of a local mirror, and when the 
documentation says to link to a public BioMart, it means to run your 
queries against a public BioMart and Ensembl database. There isn't a way 
to have our public BioMart instances talk to your private server. If you 
need to do large queries against a local Ensembl mirror, you're better 
off using the API in that case.

Please let us know if you have any further questions. Cheers.

On 10/01/18 10:46, Rehaman wrote:
> Dear Team,
>
> We are configuring Ensembl mirror locally in our environment as per 
> instructions.
> Now we need to install BioMart. In Documentation, It is saying that it 
> is not recommended to install.
>
> Could you please let us know the process of linking public BioMart.to 
> ensembl local server?
>
> Thanks in advance
> Rehaman
>
>
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20180110/1e855686/attachment.html>


More information about the Dev mailing list