[ensembl-dev] No variants shown gene up- and downstream
Fin Swimmer
ensembl at need-login.de
Thu Aug 2 13:12:16 BST 2018
Hello Sarah,
I didn't mean the variant table. What I meant was the sequence view
under "Exons" for a specific transcript, e.g.
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000134086;r=3:10145464-10147765;t=ENST00000256474
Sorry, if this wasn't clear.
fin swimmer
Am 2018-08-02 11:36, schrieb Sarah Hunt:
> Hi Fin,
>
> We are no longer reporting upstream and downstream variants on our
> gene pages for human. The table was becoming cumbersome to use since
> the number of variants greatly increased in density.
>
> We have a new variant table available from our location pages. To
> access if from a gene page, select the 'Location' tab then select
> 'Variant table' from the menu on the left. From the initial table, you
> can use the usual location navigation to move along the chromosome.
> Here's an example link:
>
> http://www.ensembl.org/Homo_sapiens/Location/Variant/Table?db=core;g=ENSG00000158158;r=2:96760498-96760998
>
> I'm sorry we neglected to announce this in the release blog.
>
> Best wishes,
>
> Sarah
>
> On 02/08/2018 09:57, Fin Swimmer wrote:
>> Hello,
>>
>> may it be, that with the new realease, variants that are located up-
>> or downstream of my selected gene aren't shown anymore?
>>
>> I've checked whether I have any fiters active. But I haven't.
>>
>> fin swimmer
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