[ensembl-dev] (no subject)
mag
mr6 at ebi.ac.uk
Tue Jun 27 08:52:36 BST 2017
Hi Mahmood,
The GRCh37 databases are stored on ensembldb.ensembl.org like our main
databases, but on port 3337 rather than the default 3306.
To use the API, you would want to use something like
$registry->load_registry_from_db(
-host => 'ensembldb.ensembl.org',
-user => 'anonymous',
-port ==> 3337
);
Hope that helps,
Magali
On 27/06/2017 08:49, Mahmood Naderan wrote:
> Sorry for the previous post.
>
> I mean this
>
> $registry->load_registry_from_db(
> -host=> 'grch37.ensembl.org <http://grch37.ensembl.org>', # alternatively 'useastdb.ensembl.org <http://useastdb.ensembl.org>'
> -user=> 'anonymous'
> );
>
>
> Regards,
> Mahmood
>
>
>
> On Tue, Jun 27, 2017 at 12:18 PM, Mahmood Naderan
> <mahmood.nt at gmail.com <mailto:mahmood.nt at gmail.com>> wrote:
>
> Hi,
> I usually go to http://grch37.ensembl.org/Homo_sapiens/Info/Index
> <http://grch37.ensembl.org/Homo_sapiens/Info/Index> to get the
> sequence. If I want to use the perl api, should I write something
> like this:
>
>
> cs
> Regards,
> Mahmood
>
>
>
>
>
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