[ensembl-dev] (no subject)

[Mahmood Naderan]

Thanks. Although I read the manual (core api), still I have some questions.

1- With the web interface, I search for a gene name, e.g. SLC4A11. I also
set the category to "gene". In the result, I then click on "SLC4A11 (Human
Gene)". Then I click on sequence. Then I proceed to download the file (as
fasta or rtf).
2- I also  want to retrieve the a specific position of that gene.

Roughly, I have to do like this:

my $slice_adaptor = $registry->get_adaptor( 'Human', 'Core', 'Slice'
);my $slice = $slice_adaptor->fetch_by_region( 'chromosome', 'slc4a11'
);
my $sequence = $slice->seq();print $sequence, "\n";


The print command should print what I see in the fasta or rtf file. Is that
right?! I want to know if I understand that correctly and I am on the right
track.


Regards,
Mahmood
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