[ensembl-dev] [VEP] Producing html summary plots from several vep jobs?

[William McLaren]

Hi Giuseppe,

Currently no, there’s no easy way to merge the statistics across separate VEP runs.

If you use the -stats_text flag, this gives you a text-based stats file that you may find easier to merge across runs, but then you would have to generate the charts yourself from the data in these files; this should be fairly straightforward in any spreadsheet package, however.

Regards

Will McLaren
Ensembl Variation


On 26 June 2017 at 09:39:00, Giuseppe Gallone (gg14 at sanger.ac.uk) wrote:

Hi  

I'm running per-chromosome VEP jobs on a cluster and noticed it is  
possible to produce tidy html summary stats/plots alongside the actual  
per-chromosome vcf outputs.  

Is there a way to produce one such plot to summarise results for all  
chromosomes, short of running a huge vep job across all chromosomes?  

I guess what I'm asking is if there is a way to save per-chromosome plot  
data and then summarise the results in a master html file.  

Best wishes,  

Giuseppe  
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