[ensembl-dev] prerequisites for Bio-DB-HTS

[Rishi Nag]

Hi Mahmood

My personal preference is local::lib but many others use perlbrew. IIRC There is occasionally an issue where a different compiler is used for HTSlib 
than other library files on a system under perlbrew.

Regards

Rishi

On 25/06/2017 20:10, Mahmood Naderan wrote:
> Thanks for the feedback. Meanwhile, I want to know which method is recommended by you for "installing perl packages as non root user". There are some 
> choices including perlbrew, local::lib and other things.
> 
> I just want to be in the same track as you.
> 
> Regards,
> Mahmood
> 
> 
> 
> On Sun, Jun 25, 2017 at 11:11 PM, Rishi Nag <rishi at ebi.ac.uk <mailto:rishi at ebi.ac.uk>> wrote:
> 
>     Hi Mahmood
> 
>     The main thing that Bio::DB::HTS depends on that is outside of Perl, so if you could do a ls $HTSLIB_DIR, and some of the error messages, that
>     would be helpful. There are issues on the latest Mac OS that mean the latest HTSlib may not have compiled correctly. If you run 'perl INSTALL.pl'
>     the script will attempt to download and build an earlier HTSlib automatically.
> 
>     You can find further guidance at the readme file for Bio::DB::HTS at https://github.com/Ensembl/Bio-DB-HTS <https://github.com/Ensembl/Bio-DB-HTS>.
> 
>     Regards
> 
>     Rishi
> 
> 
> 
> 
> 
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