[ensembl-dev] prerequisites for Bio-DB-HTS

[Rishi Nag]

Hi Mahmood

The main thing that Bio::DB::HTS depends on that is outside of Perl, so 
if you could do a ls $HTSLIB_DIR, and some of the error messages, that 
would be helpful. There are issues on the latest Mac OS that mean the 
latest HTSlib may not have compiled correctly. If you run 'perl 
INSTALL.pl' the script will attempt to download and build an earlier 
HTSlib automatically.

You can find further guidance at the readme file for Bio::DB::HTS at 
https://github.com/Ensembl/Bio-DB-HTS.

Regards

Rishi


On 25/06/2017 14:34, Mahmood Naderan wrote:
> Hi,
> I am trying to install the perl api via the instructions at 
> http://www.ensembl.org/info/docs/api/api_installation.html
>
> At the step where I am going to run 'perl Build.PL' I get a lot of 
> errors regarding the dependencies and it seems that perl is not going 
> to automatically resolve them. The repository is now a mess! and there 
> are many failed packages which I give them up!
>
>
> Please let me know which prerequisite packages should I install for 
> Bio-DB-HTS.
>
> Regards,
> Mahmood
>
>
>
>
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Interim Coordinator with Data and Security Working Groups,
Global Alliance for Genomics and Health

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