[ensembl-dev] Ensemble Search Help

[Bradley Ross]

Hello,


I am searching the human GRCh38.p10 through ensembl. For example I search the location of the PTEN gene according to the locations given by the NIH site: https://ghr.nlm.nih.gov/gene/PTEN#sourcesforpage


According to that site, the PTEN location is 10:87,863,438-87,971,930.


I then entered the above location onto the ensembl GRCh38.p10 browser but changed the first number to 87,763,438 to move more upstream. Within the new region of 10:87,763,438-87,971,930, the sequence AGGTCA should be found but it is not revealed on the ensembl.


Brad

________________________________
From: Dev <dev-bounces at ensembl.org> on behalf of Ben Moore <bmoore at ebi.ac.uk>
Sent: June 6, 2017 10:21:31 AM
To: Ensembl developers list
Subject: Re: [ensembl-dev] Ensemble Search Help

Hi Brad,

We can definitely try and help you. You can get help through this mailing list, or you can send further information to helpdesk at ensembl.org<mailto:helpdesk at ensembl.org>, which will create a ticket in our helpdesk system, where a member of the Ensembl team will help you directly. In any case, we’d need to know some more information:
- which species are you searching? which genome assembly are you using in your work?
- do you have an example set of genomic coordinates that you have used?
- what do you see (screenshot)? What do you expect to see?

Best wishes

Ben

On 6 Jun 2017, at 15:15, Bradley Ross <1br6 at queensu.ca<mailto:1br6 at queensu.ca>> wrote:

Hello,

I was wondering if there was someone I could contact regarding using the genome browser Ensembl.

I have searched specific regions where I know a particular sequence should be located, but it does not come up when I search through this genome browser.

Any assistance would be greatly appreciated.

Brad
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Ben Moore
Ensembl Outreach Officer

European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge
CB10 1SD
UK

bmoore at ebi.ac.uk<mailto:bmoore at ebi.ac.uk>
+44 (0)1223 494265

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