[ensembl-dev] UniGene cross-references

[Sebastien Moretti]

Hi

thanks for your explanations.
You have additional filters that make sense.

Best regards
Sébastien

> Dear Sebastien,
>
> To map UniGene cross-references to Ensembl features, we align the
> sequence against ours.
> For Hs.523443, we align 96% of the Ensembl sequence, but only 38% of the
> UniGene sequence aligns against Ensembl.
> http://dec2014.archive.ensembl.org/Homo_sapiens/Gene/Matches?db=core;g=ENSG00000244734;r=11:5225464-5229395;t=ENST00000335295
>
>
> Since release 79, we only keep alignments which are above the 90%
> threshold for both sequences.
> This filters out fragments/partial alignments and is why this UniGene id
> is not mapped to Ensembl since release 79 (March 2015).
>
>
> Regards,
> Magali
>
> On 20/02/2017 09:56, Sebastien Moretti wrote:
>> Hi
>>
>> I wonder why the UniGene cross-reference is no more associated with
>> gene HBB (ENSG00000244734).
>>
>> The cross-reference to UniGene is still in UniProt for that Gene/Protein.
>>
>> Regards
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--
Sébastien Moretti
Staff Scientist
Department of Ecology and Evolution,
Biophore, University of Lausanne,
CH-1015 Lausanne, Switzerland
Tel.: +41 (21) 692 4221/4079
http://selectome.unil.ch/ http://bgee.unil.ch/