[ensembl-dev] VEP 90 --dir option

Anja Thormann anja at ebi.ac.uk
Tue Aug 29 10:46:57 BST 2017

Hi Brad,

I couldn’t reproduce the problem. Do you get an error message which you can share? Which cache directory is specified in your output file? There should be a line starting with '## Using cache in’. Have you updated your cache files to most recent files from release/90? Could you please try and use —dir_cache (from cache options http://www.ensembl.org/info/docs/tools/vep/script/vep_options.html <http://www.ensembl.org/info/docs/tools/vep/script/vep_options.html>) and see if that works?


> On 25 Aug 2017, at 17:28, Crone, Bradley <bradley-crone at uiowa.edu> wrote:
> Hello,
> I'm having issues with VEP 90 specifying my cache directory with the --dir option.
> The script ignores my path and defaults to $HOME/.vep. This was not an issue in previous VEP iterations.
> Thanks,
> Brad Crone
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