[ensembl-dev] Missing attributes in BioMart for Ensembl version 90

mag mr6 at ebi.ac.uk
Fri Aug 25 08:46:12 BST 2017


Hi Thomas,

The status field for genes and transcripts has been retired, as 
announced by Andy Yates back in April 
(http://lists.ensembl.org/pipermail/dev/2017-April/012421.html)
The version 90 BioMart is the final product, containing all data 
generated for release 90.


Hope that helps,
Magali

On 24/08/2017 21:58, Thomas Danhorn wrote:
> Hi,
>
> I noticed that some of the BioMart attributes (specifically in Ensembl 
> Genes -> Mouse Genes) available in previous Ensembl versions are 
> missing in the current version, e.g. "Status (gene)" (under GENE), and 
> "Transmembrane helices" (under PROTEIN DOMAINS AND FAMILIES: -> 
> Protein features).
>
> Is the version 90 BioMart still a work in progress, or were these 
> attributes removed deliberately?  If the former, when can we expect 
> them to be added, and if the latter, why?
>
> Thank you very much for your help!
>
> Thomas
>
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