[ensembl-dev] COSMIC annotations missing

[Will McLaren]

Hi Guillermo,

I don't see this issue - see attached screenshot.

I've also tested with the local script version and it works OK for me. Of
course I'm assuming you have --check_existing enabled if you're running the
script?

Regards

Will McLaren
Ensembl Variation


On 16 September 2016 at 12:37, Guillermo Marco Puche <
guillermo.marco at sistemasgenomicos.com> wrote:

> Dear devs,
>
> I'm aware of the COSMIC licensing changes. I'm trying to annotate a huge
> VCF with latest vep (85). I'm not getting any COSMIC annotation at all. The
> following two VCF variants have COSMIC annotations but I'm getting none
> with vep:
>
> chr1    69224   .       A       C
> chr1    69230   .       A       C
>
> Has been COSMIC removed from Ensembl public annotations even if VCF
> headers shows COSMIC=77? I thought that the previous releases would stay in
> Ensembl.
>
> Regards,
> Guillermo
>
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