[ensembl-dev] ExAC on hg38 variants

[Will McLaren]

Hi Guillermo,

Yes, we use a lifted-over version of the ExAC VCF file to populate the VEP
cache.

Regards

Will

On 17 October 2016 at 16:59, Guillermo Marco Puche <
guillermo.marco at sistemasgenomicos.com> wrote:

> Dear devs,
>
> As far as I know ExAC data still on hg19 genome version on latest release.
> I'm using VEP cache and Ensembl DB with version 86/hg38. Is it possible to
> use the --maf_exac option even with hg38 data? Does Ensembl cache include
> some kind of lifted over data to work with hg38 VEP annotation?
>
> Regards,
> Guillermo.
>
>
>
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