[ensembl-dev] Combined Ensembl database installation for 37 and 38

[Genomeo Dev]

Thank you Steve.

G.

On 24 June 2016 at 12:49, Steve Trevanion <steve at ebi.ac.uk> wrote:

> Hi,
>
> We would recommend having two distinct MySQL servers for the GRCh38 and
> GRCh37 databases. This would be particularly significant for species other
> than human where the database name is not sufficient to identify the data
> it contains - for example the data in mus_musculus_core_84_38 on
> ensembldb.ensembl.org:5306 is different to that in
> mus_musculus_core_84_38 on ensembldb.ensembl.org:3337
>
> If you are interested in setting up two webservers I suggest having two
> separate checkouts of the code. You can run two servers on the same host as
> long as they use different ports. We routinely run multiple servers on the
> same hardware in this manner.
>
> Regards,
>
> Steve
>
>
> On 23/06/16 17:41, Genomeo Dev wrote:
>
> Hi guys,
>
> Any ideas on the question below please?
>
> Thanks.
>
> G.
>
> On Wednesday, 22 June 2016, Genomeo Dev < <genomeodev at gmail.com>
> genomeodev at gmail.com> wrote:
>
>> Dear Ensembl Dev team,
>>
>> I am interested in installing the Ensembl database with the the latest
>> releases for GRCh37 and GRCh38. I have found the following documentation
>> for each genome build:
>>
>> 37
>> http://grch37.ensembl.org/info/docs/webcode/mirror/index.html
>>
>> 38
>> http://asia.ensembl.org/info/docs/webcode/mirror/index.html
>>
>> My questions:
>>
>> 1. Do I have to install two separate instances of the ensembl database
>> for each build?
>>
>> 2. If yes, are there common parts of the two installations that should
>> only be done once?
>>
>> 3. If previous questions are irrelevant, what is the best format for
>> installing 37 and 38 together?
>>
>> Thanks,
>>
>> --
>> G.
>>
>
>
> --
> G.
>
>
>
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-- 
G.
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