[ensembl-dev] NHX export with duplicated protein_id

[Matthieu Muffato]

Hi Sébastien

Somebody has just reported the same error on helpdesk@
I have pushed a fix on the version/83 and master branches

Cheers,
Matthieu

On 08/02/16 16:32, Sébastien Moretti wrote:
> Hi
>
> with Ensembl 83 API, I export genetree object as nhx - as before - with
>     my $nhx = $tree->nhx_format('protein_id');
> but the NHX tree contains duplicated protein_ids.
>
> E.g.
> (((((((((((((ENSTTRP00000007668ENSTTRP00000007668:0.100241[&&NHX:D=N:G=ENSTTRG00000008107:T=9739],ENSOARP00000019338ENSOARP00000019338:0.104678
> ...
>
> How to solve that?
> Maybe there is a new nhx_format option for protein_id?
>
> Regards
>