[ensembl-dev] NHX export with duplicated protein_id

[Sebastien Moretti]

Hi Matthieu

Great!
Thanks

> Hi Sébastien
>
> Somebody has just reported the same error on helpdesk@
> I have pushed a fix on the version/83 and master branches
>
> Cheers,
> Matthieu
>
> On 08/02/16 16:32, Sébastien Moretti wrote:
>> Hi
>>
>> with Ensembl 83 API, I export genetree object as nhx - as before - with
>>     my $nhx = $tree->nhx_format('protein_id');
>> but the NHX tree contains duplicated protein_ids.
>>
>> E.g.
>> (((((((((((((ENSTTRP00000007668ENSTTRP00000007668:0.100241[&&NHX:D=N:G=ENSTTRG00000008107:T=9739],ENSOARP00000019338ENSOARP00000019338:0.104678
>>
>> ...
>>
>> How to solve that?
>> Maybe there is a new nhx_format option for protein_id?
>>
>> Regards

--
Sébastien Moretti
Staff Scientist
SIB Vital-IT EMBnet, Quartier Sorge - Genopode
CH-1015 Lausanne, Switzerland
Tel.: +41 (21) 692 4079/4221
http://www.vital-it.ch/ http://myhits.vital-it.ch/ http://MetaNetX.org/