[ensembl-dev] NHX export with duplicated protein_id

Sébastien Moretti sebastien.moretti at unil.ch
Mon Feb 8 16:32:12 GMT 2016


with Ensembl 83 API, I export genetree object as nhx - as before - with
    my $nhx = $tree->nhx_format('protein_id');
but the NHX tree contains duplicated protein_ids.


How to solve that?
Maybe there is a new nhx_format option for protein_id?


Sébastien Moretti
Staff Scientist
Department of Ecology and Evolution,
Biophore, University of Lausanne,
CH-1015 Lausanne, Switzerland
Tel.: +41 (21) 692 4221/4079
http://selectome.unil.ch/ http://bgee.unil.ch/

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