[ensembl-dev] VEP Plugin subroutine once finished

Konrad Karczewski konradk at broadinstitute.org
Wed May 27 23:23:43 BST 2015

Hi VEP/Ensembl team,

At the moment, there exist subroutines to run something when the plugin is instantiated, and then for each annotation, but is there a way to run something once the job has finished? I'm using LOFTEE with MySQL now and DBD sometimes leaves connections open, which is leading to MySQL blocking. I'd love a way to run $db->disconnect() once it's all done. Would it be possible to get something like this into the BaseVepPlugin class? A simple optional subroutine that runs once when VEP finishes would be awesome to have.

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