[ensembl-dev] RegulatoryFeatures in VEP v79?

Daniel Zerbino zerbino at ebi.ac.uk
Thu May 21 07:17:55 BST 2015

Hello Konrad,

this is because on release 79 we replaced the old regulatory build with 
the newer version (which we had released for GRCh38 in v76).

There would definitely be some moving around of features as both builds 
are very different in the way they are computed.



On 5/21/15 5:28 AM, Konrad Karczewski wrote:
> Hi Will, everyone,
> Are RegulatoryFeature annotations expected to have the same results in 
> VEP v79 (GRCh37) as previous versions (e.g. v77)? When annotating the 
> ExAC VCF, the older versions included many ENSR* annotations, but 
> v79's do not (same command including --everything both times). For 
> instance, the following variant used to overlap ENSR00000528767 but 
> does not seem to in my most recent version:
> 1       13372   .       G       C
> Any idea why this might be happening? All other annotations seem fine.
> Thanks!
> -Konrad
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