[ensembl-dev] Rest

Igo Medeiros igo701 at gmail.com
Tue Jun 30 12:28:43 BST 2015


Thank you for help.
I understand better now, and how I can use them.
Excellent work with Rest API Endpoints.
Thank you.

2015-06-30 6:37 GMT-03:00 Will McLaren <wm2 at ebi.ac.uk>:

> Hello,
>
> The VEP endpoint is used to predict the effects of _any_ arbitrary
> position and allele that you input. The coordinates that you input do not
> have to correspond to a known variant (e.g. from dbSNP).
>
> If you do input coordinates of a known variant, then the ID and related
> information for this variant will be reported too (e.g.
> http://grch37.rest.ensembl.org/vep/human/region/1:230845794-230845794/C).
>
> The Overlap endpoint is used to find known variants that overlap a region.
>
> Regards
>
> Will McLaren
> Ensembl Variation
>
> On 29 June 2015 at 20:12, Igo Medeiros <igo701 at gmail.com> wrote:
>
>> I was finding into database, but i didn't find too.
>>
>> 2015-06-29 13:59 GMT-03:00 Igo Medeiros <igo701 at gmail.com>:
>>
>>> Thank you for help.
>>> I have other question about rest.
>>> I am using this link
>>> http://grch37.rest.ensembl.org/vep/human/region/22:30163533-30163533/C?
>>> to find a mutation, but i noticed that when i use
>>> http://grch37.rest.ensembl.org/overlap/region/human/22:30162533-30165533?feature=variation;
>>> i don't find, in this interval, the mutation that i found in rest.vep.
>>> Is there some way that i can pass the interval in rest.vep whitout the
>>> allele?
>>>
>>> Thank you for attention.
>>>
>>> 2015-06-29 8:52 GMT-03:00 Will McLaren <wm2 at ebi.ac.uk>:
>>>
>>>> Hello,
>>>>
>>>> The variation ID endpoint gives clinical significance and phenotype
>>>> (disease) information, e.g.
>>>>
>>>>
>>>> http://rest.ensembl.org/variation/human/rs699?content-type=application/json&phenotypes=1
>>>>
>>>> Documentation is here:
>>>> http://rest.ensembl.org/documentation/info/variation_id
>>>>
>>>> Study information is not currently available via our REST API.
>>>>
>>>> Regards
>>>>
>>>> Will McLaren
>>>> Ensembl Variation
>>>>
>>>> On 29 June 2015 at 12:15, Igo Medeiros <igo701 at gmail.com> wrote:
>>>>
>>>>> Hi ENsembl Team,
>>>>> I am using rest, but I need the information about clinical
>>>>> significance, disease and study, but I am not find there. How can I find
>>>>> this informations in rest?
>>>>> I was looking at documentation, but not found.
>>>>>
>>>>> --
>>>>> Igo Paixão de Medeiros
>>>>>
>>>>> _______________________________________________
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>>>>>
>>>>>
>>>>
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>>>>
>>>
>>>
>>> --
>>> Igo Paixão de Medeiros
>>>
>>
>>
>>
>> --
>> Igo Paixão de Medeiros
>>
>> _______________________________________________
>> Dev mailing list    Dev at ensembl.org
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>>
>>
>
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>


-- 
Igo Paixão de Medeiros
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