[ensembl-dev] Rest

Will McLaren wm2 at ebi.ac.uk
Tue Jun 30 10:37:22 BST 2015


Hello,

The VEP endpoint is used to predict the effects of _any_ arbitrary position
and allele that you input. The coordinates that you input do not have to
correspond to a known variant (e.g. from dbSNP).

If you do input coordinates of a known variant, then the ID and related
information for this variant will be reported too (e.g.
http://grch37.rest.ensembl.org/vep/human/region/1:230845794-230845794/C).

The Overlap endpoint is used to find known variants that overlap a region.

Regards

Will McLaren
Ensembl Variation

On 29 June 2015 at 20:12, Igo Medeiros <igo701 at gmail.com> wrote:

> I was finding into database, but i didn't find too.
>
> 2015-06-29 13:59 GMT-03:00 Igo Medeiros <igo701 at gmail.com>:
>
>> Thank you for help.
>> I have other question about rest.
>> I am using this link
>> http://grch37.rest.ensembl.org/vep/human/region/22:30163533-30163533/C?
>> to find a mutation, but i noticed that when i use
>> http://grch37.rest.ensembl.org/overlap/region/human/22:30162533-30165533?feature=variation;
>> i don't find, in this interval, the mutation that i found in rest.vep.
>> Is there some way that i can pass the interval in rest.vep whitout the
>> allele?
>>
>> Thank you for attention.
>>
>> 2015-06-29 8:52 GMT-03:00 Will McLaren <wm2 at ebi.ac.uk>:
>>
>>> Hello,
>>>
>>> The variation ID endpoint gives clinical significance and phenotype
>>> (disease) information, e.g.
>>>
>>>
>>> http://rest.ensembl.org/variation/human/rs699?content-type=application/json&phenotypes=1
>>>
>>> Documentation is here:
>>> http://rest.ensembl.org/documentation/info/variation_id
>>>
>>> Study information is not currently available via our REST API.
>>>
>>> Regards
>>>
>>> Will McLaren
>>> Ensembl Variation
>>>
>>> On 29 June 2015 at 12:15, Igo Medeiros <igo701 at gmail.com> wrote:
>>>
>>>> Hi ENsembl Team,
>>>> I am using rest, but I need the information about clinical
>>>> significance, disease and study, but I am not find there. How can I find
>>>> this informations in rest?
>>>> I was looking at documentation, but not found.
>>>>
>>>> --
>>>> Igo Paixão de Medeiros
>>>>
>>>> _______________________________________________
>>>> Dev mailing list    Dev at ensembl.org
>>>> Posting guidelines and subscribe/unsubscribe info:
>>>> http://lists.ensembl.org/mailman/listinfo/dev
>>>> Ensembl Blog: http://www.ensembl.info/
>>>>
>>>>
>>>
>>> _______________________________________________
>>> Dev mailing list    Dev at ensembl.org
>>> Posting guidelines and subscribe/unsubscribe info:
>>> http://lists.ensembl.org/mailman/listinfo/dev
>>> Ensembl Blog: http://www.ensembl.info/
>>>
>>>
>>
>>
>> --
>> Igo Paixão de Medeiros
>>
>
>
>
> --
> Igo Paixão de Medeiros
>
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info:
> http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20150630/62ca6fac/attachment.html>


More information about the Dev mailing list