[ensembl-dev] VEP installation problems - failed to parse TBX_GENERIC, was wrong -p [type] used?

[Will McLaren]

Hello,

I have not seen this error before, I'm afraid.

I'd try deleting the cache, re-downloading it, and re-running the convert
script.

You will need to delete $HOME/.vep/homo_sapiens/80_GRCh38

Assuming that you are using Human and GRCh38...

Regards

Will McLaren
Ensembl Variation

On 2 July 2015 at 05:20, Beifang Niu <bniu at genome.wustl.edu> wrote:

> Dear developers,
>
> I am trying to install VEP, but when i ran convert_cache.pl, i got many
> error message like the following. I am thinking that these errors were
> caused by tabix tool.  I was trying to search but i failed to find any
> solution.
>
> any ideas ? thank you
>
>
> [E::get_intv] failed to parse TBX_GENERIC, was wrong -p [type] used?
> The offending line was: "HSCHR16_2_CTG3_1       rs377310485     .       .
>       69212363        .       T/C     -1      .       .       .       .
>   .       .       .       .       ..       ."
> [E::get_intv] failed to parse TBX_GENERIC, was wrong -p [type] used?
> The offending line was: "HSCHR16_2_CTG3_1       rs531879943     .       .
>       69190762        .       G/A     -1      A       0.0002  .       .
>   .       .       .       .       ..       ."
>
>
>
>
>
>
>
>
>
>
>
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