[ensembl-dev] VEP installation problems - failed to parse TBX_GENERIC, was wrong -p [type] used?

Beifang Niu bniu at genome.wustl.edu
Thu Jul 2 05:20:20 BST 2015


Dear developers,

I am trying to install VEP, but when i ran convert_cache.pl, i got many
error message like the following. I am thinking that these errors were
caused by tabix tool.  I was trying to search but i failed to find any
solution.

any ideas ? thank you


[E::get_intv] failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "HSCHR16_2_CTG3_1       rs377310485     .       .
    69212363        .       T/C     -1      .       .       .       .
.       .       .       .       ..       ."
[E::get_intv] failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "HSCHR16_2_CTG3_1       rs531879943     .       .
    69190762        .       G/A     -1      A       0.0002  .       .
.       .       .       .       ..       ."











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