[ensembl-dev] Bos taurus Baylor Btau_4.6.1 (UCSC bosTau7) in Ensembl

[Joel Fillon, Mr]

Hi Dan,

OK, thanks for the update.

Joël

________________________________________
De : dev-bounces at ensembl.org [dev-bounces at ensembl.org] de la part de Daniel Barrell [dbarrell at ebi.ac.uk]
Envoyé : mercredi 14 janvier 2015 11:22
À : dev at ensembl.org
Objet : Re: [ensembl-dev] Bos taurus Baylor Btau_4.6.1 (UCSC bosTau7) in Ensembl

Hi Joël,

Ensembl will annotate the assembly that is agreed to be the
'representative genome' by the groups involved in the 'Browser Genome
Release Agreement'
(http://www.ensembl.org/info/about/legal/browser_agreement.html), that
is: UCSC, NCBI and Ensembl.  For cow this is UMD_3.1.1:
http://www.ncbi.nlm.nih.gov/assembly/GCF_000003055.5/

So at the moment we have no plans for Btau_4.6.1.

I hope that helps,

Dan

PS: I'm aware that Ensembl is still showing annotation for UMD_3.1 but
that's down to time. Plus the majority of the contigs are the same as 3.1.1.


On 09/01/15 15:29, Joel Fillon, Mr wrote:
> Happy New year Ensembl fans,
>
> Do you plan to include Bos taurus assembly  Baylor Btau_4.6.1 (UCSC bosTau7) in Ensembl?
>
> http://www.ncbi.nlm.nih.gov/assembly/GCF_000003205.5/
> https://www.hgsc.bcm.edu/other-mammals/bovine-genome-project
>
> Or did you just skip this one due to quality, lack of time or other?
>
> Thanks,
> Joël
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