[ensembl-dev] Can't locate object method "fetch_by_Member_id_Member_id

[Matthieu Muffato]

fetch_by_Member_id_Member_id() has been replaced by 
fetch_by_Member_Member() which takes object instances rather than dbIDs
You also don't need the "->[1]" at the end of that line

Then, get_SimpleAlign() without arguments will work the same way as 
before. I believe percentage_identity() is still in BioPerl

Matthieu

On 08/04/15 14:38, Liu Jialin wrote:
> Dear list,
>
>
> I am wondering what's the new method for replacing
> fetch_by_Member_id_Member_id?
>
> Because I got amistake like this:Can't locate object method
> "fetch_by_Member_id_Member_id".
>
> By the way, did the methodsget_SimpleAlign()and
> percentage_identity()also have changed?
>
> My script as below.
>
> Thanks a lot for your help.​
>
>
> Regards,
>
> Jialin
>
>
> my$homology= $homology_adaptor->fetch_by_Member_id_Member_id($gene1,
> $gene2)->[1]
>
> my$simple_align= $homology->get_SimpleAlign();
>
> print"\tIdentity: ", $simple_align->percentage_identity() ,"%\n";
>
>
>
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-- 
Matthieu Muffato, Ph.D.
Ensembl Compara and TreeFam Project Leader
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
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