[ensembl-dev] Missing Affymetrix Probset Annotation

Nathan Johnson njohnson at ebi.ac.uk
Thu Sep 18 15:22:53 BST 2014


Not to worry, it seems they haven’t updated that page yet, but I’ve found the relevant files elsewhere on their website.

Nath

On 18 Sep 2014, at 15:17, Nathan Johnson <njohnson at ebi.ac.uk> wrote:

> Actually Jens, I’d be interested to know where your info for these arrays comes from as I can’t find them on the affy technical reference page:
> 
> http://www.affymetrix.com/support/technical/byproduct.affx?cat=arrays&Mouse#Mouse
> 
> 
> Thanks
> 
> Nath
> 
> On 18 Sep 2014, at 14:55, Jens Hooge <jens.hooge at bayer.com> wrote:
> 
>> Dear EnsemblDev team,
>> Hello everyone,
>>  
>> I’m trying to generate probeset annotations for the following Affymetrix chips using the biomart interface:
>>  
>> affy_hg_u133_plus_2   Affy HG U133-PLUS-2 probeset
>> affy_hugene_1_0_st_v1 Affy HuGene 1_0 st v1 probeset
>> affy_hugene_2_0_st_v1 Affy HuGene 2_0 st v1 probeset
>> affy_mogene_2_1   Affy MoGene probeset
>> affy_ragene_2_1    Affy RaGene probeset
>>  
>> However affy_mogene_2_1 as well as affy_ragene_2_1 seem to be missing. Are there any plans of including it in biomart and if yes when?
>>  
>> Mit freundlichen Grüßen / Kind Regards / Atenciosamente
>>  
>> Jens Hooge
>>  
>> ________________________________
>> Jens Hooge
>> Computer Scientist Bioinformatics
>> Bayer HealthCare Pharmaceuticals - Bayer Pharma AG
>> Target Discovery Technologies
>> Müllerstr. 178, S109/7/728A
>> 13353 Berlin, Deutschland
>> Tel. +49 30 468 17260
>> Fax +49 30 468 192087
>> E-Mail: jens.hooge at bayer.com
>> Web: http://www.bayerpharma.com
>>  
>> Vorstand: Dieter Weinand, Vorsitzender | Manfred Vehreschild, Hartmut Klusik 
>> Vorsitzender des Aufsichtsrats: Michael König 
>> Sitz der Gesellschaft: Berlin | Eintragung: Amtsgericht Charlottenburg HRB 283 B
>>  
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