[ensembl-dev] Homology REST API
Matthieu Muffato
muffato at ebi.ac.uk
Tue Sep 16 13:38:07 BST 2014
Hi André
Actually, we cannot only provide taxon_ids because they are not unique
throughout the set of species of Ensembl Genomes (we share the same
code-base). It wouldn't be possible to assign genes to species in some
cases.
But we could still add the taxon_id information to the current format,
and keep the species names.
Matthieu
On 16/09/14 13:27, Kieron Taylor wrote:
> Hi André,
>
> This is a reasonable request, although you can surely acquire the
> name-to-taxon translation from our /info/species endpoint as well.
>
> If we decide to add this, it won't appear until Ensembl 78 is out,
> sometime around December.
>
> Regards,
>
> Kieron
>
> Ensembl Core
>
> On 16/09/2014 12:17, André Blavier wrote:
>> Hi Ensembl devs,
>> Could you please add an option to the GET homology REST API to output
>> taxon ids instead of (or in addition to) species names?
>> Many thanks,
>> André
>>
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Matthieu Muffato, Ph.D.
Ensembl Compara Project Leader
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