[ensembl-dev] Homology REST API
Kieron Taylor
ktaylor at ebi.ac.uk
Mon Sep 22 14:01:22 BST 2014
Dear André,
After some internal discussion and hasty patching, we have managed to
include your request in release 77, coming in the next few weeks. Please
let us know if it misbehaves, and otherwise enjoy the taxon ids in your
homology results.
Regards,
Kieron
--
Kieron Taylor PhD.
Ensembl Core team
EBI
On 16/09/2014 13:38, Matthieu Muffato wrote:
> Hi André
>
> Actually, we cannot only provide taxon_ids because they are not unique
> throughout the set of species of Ensembl Genomes (we share the same
> code-base). It wouldn't be possible to assign genes to species in some
> cases.
> But we could still add the taxon_id information to the current format,
> and keep the species names.
>
> Matthieu
>
> On 16/09/14 13:27, Kieron Taylor wrote:
>> Hi André,
>>
>> This is a reasonable request, although you can surely acquire the
>> name-to-taxon translation from our /info/species endpoint as well.
>>
>> If we decide to add this, it won't appear until Ensembl 78 is out,
>> sometime around December.
>>
>> Regards,
>>
>> Kieron
>>
>> Ensembl Core
>>
>> On 16/09/2014 12:17, André Blavier wrote:
>>> Hi Ensembl devs,
>>> Could you please add an option to the GET homology REST API to output
>>> taxon ids instead of (or in addition to) species names?
>>> Many thanks,
>>> André
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