[ensembl-dev] Converting mouse gene IDs to human

[Eva Goncalves Serra]

Thanks so much Kieron! I think I am sorted.

Cheers,
Eva

On 05/09/2014 14:08, "Kieron Taylor" <ktaylor at ebi.ac.uk> wrote:

>Dear Eva,
>
>The finding of equivalent IDs across species relies on one of two
>mechanisms. The Compara API offers homology (see Homologies and Protein
>clusters in [1]), and the core API "xrefs" allow you to match them via
>imported annotation.
>
>If you just want to locate the original source of projected names from
>HGNC, you can use the fetch_all_by_external_name or
>fetch_all_by_external_names methods found in all FeatureAdaptors (e.g.
>GeneAdaptor) to do the job. The HGNC names are imported by us, hence
>they are considered external.
>
>[1]
>http://www.ensembl.org/info/docs/api/compara/compara_tutorial.html
>
>Regards,
>
>Kieron Taylor
>Ensembl Core
>
>On 05/09/2014 13:26, Eva Goncalves Serra wrote:
>> Hi,
>>
>> Probably a basic question: I need to convert a set of mouse gene IDs
>> (HGNC symbol) to human IDs via the API but haven¹t found a solution yet
>> (after looking at the documentation).
>>
>> Any suggestions?
>>
>> Eva
>>
>>
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