[ensembl-dev] VEP html output behaves differently

[Will McLaren]

Hi again,

Apologies for this; seems I need to find a more stable CDN for these JS
files.

I can get it to work if I replace the following lines:

  <script type="text/javascript" language="javascript" src="
http://www.datatables.net/media/javascript/complete.min.js"></script>
  <script class="jsbin" src="
http://datatables.net/download/build/jquery.dataTables.nightly.js"></script>

with:

  <script src="
http://ajax.googleapis.com/ajax/libs/jquery/1.8.2/jquery.min.js"></script>
  <script src="
http://ajax.aspnetcdn.com/ajax/jquery.dataTables/1.9.4/jquery.dataTables.min.js
"></script>

I'll patch the VEP script to reflect this too.

Regards

Will McLaren
Ensembl Variation


On 14 May 2014 12:47, Mathias Lesche <mathias.lesche at biotec.tu-dresden.de>wrote:

> Hi.
>
> I'm having again problems with the output of the standalone vep tool
> version 74 (see attached png). The search bar is gone and colours for the
> rows are white.
>
> Last time, it was suggested to change jquery.dataTables.nightly.js
> to jquery.dataTables.js. I tried both of these option and it still looks
> the same
>
> Do you know what might be the problem?
>
> best
> mathias
>
>
> On 12/13/2013 04:43 PM, Will McLaren wrote:
>
>> Hi,
>>
>> Thanks for spotting this; the HTML output is using a remote JavaScript
>> library which it looks like is currently slightly broken - you can
>> easily fix this by editing your HTML and replacing:
>>
>> jquery.dataTables.nightly.js
>>
>> with
>>
>> jquery.dataTables.js
>>
>> You can also do the same replacement in the variant_effect_predictor.pl
>> <http://variant_effect_predictor.pl> script file to prevent this
>>
>> happening to future output.
>>
>> Unfortunately I'm currently unable to push this fix live, but as soon as
>> I am able I will.
>>
>> It may be that the dataTables library gets fixed overnight tonight
>> anyway, with which the problem should go away by itself!
>>
>> Regards
>>
>> Will McLaren
>> Ensembl Variation
>>
>>
>> On 13 December 2013 15:03, Mathias Lesche
>> <mathias.lesche at biotec.tu-dresden.de
>> <mailto:mathias.lesche at biotec.tu-dresden.de>> wrote:
>>
>>     Hello,
>>
>>     I'm using VEP version 74 for the annotation and I use the --html flag.
>>
>>     Somehow the look of the html site changed within the last two days.
>>     Two days ago there was a search bar on the top right, samples were
>>     shown and one could choose how many variants are displayed on the
>>     webpage.
>>
>>     With the recent VEP call it looks like on picture firstview.png. If
>>     I remove a column it changes to another look (see secondview.png).
>>     And I can only see 10 results. It's not displaying any other results.
>>
>>     Any thought on what might be the problem? I didn't change anything
>>     on my system. I tried it with opera, firefox and google chrome on a
>>     linux machine but also with ie and firefox on windows.
>>
>>     Regards,
>>     Mathias
>>
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