[ensembl-dev] VEP html output behaves differently

[Mathias Lesche]

Hi.

I'm having again problems with the output of the standalone vep tool 
version 74 (see attached png). The search bar is gone and colours for 
the rows are white.

Last time, it was suggested to change jquery.dataTables.nightly.js
to jquery.dataTables.js. I tried both of these option and it still looks 
the same

Do you know what might be the problem?

best
mathias

On 12/13/2013 04:43 PM, Will McLaren wrote:
> Hi,
>
> Thanks for spotting this; the HTML output is using a remote JavaScript
> library which it looks like is currently slightly broken - you can
> easily fix this by editing your HTML and replacing:
>
> jquery.dataTables.nightly.js
>
> with
>
> jquery.dataTables.js
>
> You can also do the same replacement in the variant_effect_predictor.pl
> <http://variant_effect_predictor.pl> script file to prevent this
> happening to future output.
>
> Unfortunately I'm currently unable to push this fix live, but as soon as
> I am able I will.
>
> It may be that the dataTables library gets fixed overnight tonight
> anyway, with which the problem should go away by itself!
>
> Regards
>
> Will McLaren
> Ensembl Variation
>
>
> On 13 December 2013 15:03, Mathias Lesche
> <mathias.lesche at biotec.tu-dresden.de
> <mailto:mathias.lesche at biotec.tu-dresden.de>> wrote:
>
>     Hello,
>
>     I'm using VEP version 74 for the annotation and I use the --html flag.
>
>     Somehow the look of the html site changed within the last two days.
>     Two days ago there was a search bar on the top right, samples were
>     shown and one could choose how many variants are displayed on the
>     webpage.
>
>     With the recent VEP call it looks like on picture firstview.png. If
>     I remove a column it changes to another look (see secondview.png).
>     And I can only see 10 results. It's not displaying any other results.
>
>     Any thought on what might be the problem? I didn't change anything
>     on my system. I tried it with opera, firefox and google chrome on a
>     linux machine but also with ie and firefox on windows.
>
>     Regards,
>     Mathias
>
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