[ensembl-dev] Fwd: 1000 genomes

[Rebecca Ewing]

Hi Laura

I want to search using data in vcf files from our pipeline and to add the information to the files, and I wondered if there was a better way than downloading all of the files.

Thanks

Rebecca

On 9 May 2014, at 10:24, Laura Clarke <laura at ebi.ac.uk> wrote:

> Hi Rebecca
> 
> You can get the allele frequencies from Ensembl but you may find it
> easier to get the numbers from the 1000 Genomes VCF files
> 
> ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase1/analysis_results/integrated_call_sets/ALL.wgs.integrated_phase1_v3.20101123.snps_indels_sv.sites.vcf.gz
> 
> thanks
> 
> Laura
> 
> On 9 May 2014 10:19, Rebecca Ewing <rpe at sanger.ac.uk> wrote:
>>> Hi
>>> 
>>> I am writing some perl code to compare some of our data against 1000 genomes and get the minor allele frequencies. What would be the most efficient way to do this?
>>> 
>>> Thanks
>>> 
>>> Rebecca
>> 
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