[ensembl-dev] Fwd: 1000 genomes

Laura Clarke laura at ebi.ac.uk
Fri May 9 10:24:01 BST 2014


Hi Rebecca

You can get the allele frequencies from Ensembl but you may find it
easier to get the numbers from the 1000 Genomes VCF files

ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase1/analysis_results/integrated_call_sets/ALL.wgs.integrated_phase1_v3.20101123.snps_indels_sv.sites.vcf.gz

thanks

Laura

On 9 May 2014 10:19, Rebecca Ewing <rpe at sanger.ac.uk> wrote:
>> Hi
>>
>> I am writing some perl code to compare some of our data against 1000 genomes and get the minor allele frequencies. What would be the most efficient way to do this?
>>
>> Thanks
>>
>> Rebecca
>
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/




More information about the Dev mailing list