[ensembl-dev] stop codons missing in CDS definitions wheat Ensembl v22
jrozick at yahoo.com
Thu Jul 17 04:10:32 BST 2014
While looking just into TCP, here Bull and Wheat Triticum, showing, Bombus JL651282, JP820560 respectively., can also look at relating the latter of, JP820565, covering more to the right ().
While relating human, being and EST, as in BU169135, also BU198995 where coverage varies.
On Wed, 7/16/14, Ksenia Krasileva <krasileva at ucdavis.edu> wrote:
Subject: [ensembl-dev] stop codons missing in CDS definitions wheat Ensembl v22
To: dev at ensembl.org
Date: Wednesday, July 16, 2014, 7:31 PM
This is regarding T. aestivum annotation Ensembl
v22. It looks like the stop codons are not part
of CDS as defined by Sequence Ontology but are placed
instead in 3'UTRs.
This affects some feature extractions and variant
prediction with VEP (no 'stop_loss' category).
Thank you in advance.
Ksenia Krasileva, PhD
Post Doctoral Scholar
USDA NIFA Fellowship
The Dubcovsky Lab
Department of Plant Sciences
University of California, Davis
124 Robbins Hall
Davis, CA 95616
krasileva at ucdavis.edu
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