[ensembl-dev] stop codons missing in CDS definitions wheat Ensembl v22

Jason Rozick jrozick at yahoo.com
Thu Jul 17 04:10:32 BST 2014

 Hello Ksenia,
While looking just into TCP, here Bull and Wheat Triticum, showing, Bombus JL651282, JP820560 respectively., can also look at relating the latter of, JP820565, covering more to the right ().
While relating human, being and EST, as in BU169135, also BU198995 where coverage varies.
 Jason Rozick.
On Wed, 7/16/14, Ksenia Krasileva <krasileva at ucdavis.edu> wrote:

 Subject: [ensembl-dev] stop codons missing in CDS definitions wheat Ensembl	v22
 To: dev at ensembl.org
 Date: Wednesday, July 16, 2014, 7:31 PM
 Dear Ensembl
 This is regarding T. aestivum annotation Ensembl
 v22. It looks like the stop codons are not part
 of CDS as defined by Sequence Ontology but are placed
 instead in 3'UTRs.
 This affects some feature extractions and variant
 prediction with VEP (no 'stop_loss' category).
 Thank you in advance.
 Best wishes,
 Ksenia Krasileva, PhD
 Post Doctoral Scholar
 USDA NIFA Fellowship
 The Dubcovsky Lab
 Department of Plant Sciences
 University of California, Davis
 124 Robbins Hall
 Davis, CA 95616
 krasileva at ucdavis.edu
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