[ensembl-dev] stop codons missing in CDS definitions wheat Ensembl v22

Ksenia Krasileva krasileva at ucdavis.edu
Thu Jul 17 00:31:41 BST 2014


Dear Ensembl team,

This is regarding T. aestivum annotation Ensembl v22.
It looks like the stop codons are not part of CDS as defined by Sequence
Ontology but are placed instead in 3'UTRs.

This affects some feature extractions and variant prediction with VEP (no
'stop_loss' category).

Thank you in advance.


Best wishes,


Ksenia

-- 
Ksenia Krasileva, PhD

Post Doctoral Scholar
USDA NIFA Fellowship
The Dubcovsky Lab

Department of Plant Sciences
University of California, Davis
124 Robbins Hall
Davis, CA 95616
krasileva at ucdavis.edu
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