[ensembl-dev] Variant Tissue information

[Will McLaren]

Hi Guillermo

Ensembl Variation does not have any tissue-specific information available
I'm afraid.

The Core database offers tissue-specific RNASeq data, while the Regulation
database carries cell-specific regulatory features (which you can access
using --cell_type in the VEP). You might like to investigate these further
to see if they might help you.

Regards

Will McLaren
Ensembl Variation


On 10 February 2014 09:37, Guillermo Marco Puche <
guillermo.marco at sistemasgenomicos.com> wrote:

>  Hello,
>
> I'm looking for tissue information for variants. I would like to know if
> it's possible to extract this information from Ensembl variation DB schema
> so I can write a VEP plugin to output this information.
>
> Thank you !
>  --
>  ------------------------------
>
> Guillermo Marco Puche
> Bioinformatician, Computer Science Engineer.
> Sistemas Genómicos S.L.
> Phone: +34 902 364 669 (Ext.777)
> Fax: +34 902 364 670
> www.sistemasgenomicos.com
>
>   <https://www.sistemasgenomicos.com/web_sg/web/areas-bioinformatica.php>
>    ------------------------------
>
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