[ensembl-dev] Using REST variation endpoint to find SNP name from synonym

[Paolo Cozzi]

Dear Magali,

Thanks for your reply. I will wait for next REST server release.

regards,

Paolo


Il 01/12/2014 14:46, mag ha scritto:
> Hi Paolo,
>
> Currently, the REST variation endpoint only returns non-failed 
> variation ids.
>
> This has been updated in our upcoming release, which is due this week.
> Looking at the two ids you are mentioning, these return correct 
> results on the test server, with a 'failed' flag as well as the reason 
> for failure.
>
>
> Hope that helps,
> Magali
>
> On 01/12/2014 13:20, Paolo Cozzi wrote:
>>
>> Dear developers,
>>
>> I'm using EnsEMBL REST API to retrieve informations using 
>> "variation/:species/:id" endpoint, more precisely I need to retrive 
>> the SNP name starting from "Pig SNP Consortium" synonym. I saw that I 
>> cannot retrieve information for some id like H3GA0032554, 
>> DRGA0015483, ... even if I can search them in ensembl site. However, 
>> I saw that all of those SNPs have problems like more locations, no 
>> position in the current assembly ans so on.
>>
>> Does the REST server variation endpoint gives information only for 
>> NON problematic SNPs? And if so, How I could retrieve SNPs name from 
>> a synonym in a programmatic way?
>>
>> Thank you for your support,
>>
>> regards,
>>
>> Paolo
>>
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