[ensembl-dev] VEP script installation in CloudBioLinux

Andy Yates ayates at ebi.ac.uk
Fri Sep 13 17:36:31 BST 2013


Sorry right I'm on the right page now. I think we should be able to help with a non-interactive installer but will have to talk to some more people

Andy

On 13 Sep 2013, at 16:26, Michael Heuer <heuermh at gmail.com> wrote:

> Hello Andy,
> 
> So far I have only hacked up the one for VEP.  :)
> 
>   michael
> 
> 
> On Fri, Sep 13, 2013 at 4:23 AM, Andy Yates <ayates at ebi.ac.uk> wrote:
>> Hi,
>> 
>> Just to quickly ask do you have any experience of building a custom installation script for CloudBioLinux?
>> 
>> Andy
>> 
>> ------------
>> Andrew Yates - Ensembl Core Software Project Leader
>> European Bioinformatics Institute (EMBL-EBI)
>> European Molecular Biology Laboratory
>> Wellcome Trust Genome Campus
>> Hinxton
>> Cambridge CB10 1SD
>> Tel: +44-(0)1223-492538
>> Fax: +44-(0)1223-494468
>> http://www.ensembl.org/
>> 
>> On 11 Sep 2013, at 16:48, Michael Heuer <heuermh at gmail.com> wrote:
>> 
>>> Hello,
>>> 
>>> I would like to have the variation effect predictor (VEP) script
>>> available in the CloudBioLinux distribution
>>> 
>>> http://cloudbiolinux.org
>>> 
>>> VEP is currently available as a custom build but we do some mucking
>>> about with the installation script with sed to deal with the
>>> interactivity
>>> 
>>> https://github.com/chapmanb/cloudbiolinux/pull/116
>>> 
>>> Would it be possible for someone from the dev team to weigh in on this issue?
>>> 
>>> Thank you,
>>> 
>>>  michael
>>> 
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>> 
>> 
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