[ensembl-dev] VEP script installation in CloudBioLinux
Andy Yates
ayates at ebi.ac.uk
Fri Sep 13 17:36:31 BST 2013
Sorry right I'm on the right page now. I think we should be able to help with a non-interactive installer but will have to talk to some more people
Andy
On 13 Sep 2013, at 16:26, Michael Heuer <heuermh at gmail.com> wrote:
> Hello Andy,
>
> So far I have only hacked up the one for VEP. :)
>
> michael
>
>
> On Fri, Sep 13, 2013 at 4:23 AM, Andy Yates <ayates at ebi.ac.uk> wrote:
>> Hi,
>>
>> Just to quickly ask do you have any experience of building a custom installation script for CloudBioLinux?
>>
>> Andy
>>
>> ------------
>> Andrew Yates - Ensembl Core Software Project Leader
>> European Bioinformatics Institute (EMBL-EBI)
>> European Molecular Biology Laboratory
>> Wellcome Trust Genome Campus
>> Hinxton
>> Cambridge CB10 1SD
>> Tel: +44-(0)1223-492538
>> Fax: +44-(0)1223-494468
>> http://www.ensembl.org/
>>
>> On 11 Sep 2013, at 16:48, Michael Heuer <heuermh at gmail.com> wrote:
>>
>>> Hello,
>>>
>>> I would like to have the variation effect predictor (VEP) script
>>> available in the CloudBioLinux distribution
>>>
>>> http://cloudbiolinux.org
>>>
>>> VEP is currently available as a custom build but we do some mucking
>>> about with the installation script with sed to deal with the
>>> interactivity
>>>
>>> https://github.com/chapmanb/cloudbiolinux/pull/116
>>>
>>> Would it be possible for someone from the dev team to weigh in on this issue?
>>>
>>> Thank you,
>>>
>>> michael
>>>
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>>
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