[ensembl-dev] Ensembl API Version 72: Supported Species
Alexander Pico
apico at gladstone.ucsf.edu
Sat Sep 7 02:04:40 BST 2013
I'm receiving an error for just 2 species (out of list of 31) against version 72 of your Perl API:
* Solanum lycopersicum
* Glycine Max
Here's an example:
-------------------- WARNING ----------------------
MSG: Solanum lycopersicum is not a valid species name (check DB and API version)
FILE: Bio/EnsEMBL/Registry.pm LINE: 1188
CALLED BY: Bio/EnsEMBL/Registry.pm LINE: 973
Date (localtime) = Fri Sep 6 17:14:51 2013
Ensembl API version = 72
---------------------------------------------------
-------------------- EXCEPTION --------------------
MSG: Can not find internal name for species 'Solanum lycopersicum'
STACK Bio::EnsEMBL::Registry::get_adaptor /***/src/ensembl/modules/Bio/EnsEMBL/Registry.pm:975
STACK toplevel Ensembl_ETL_Device_v18_local.pl:437
Date (localtime) = Fri Sep 6 17:14:51 2013
Ensembl API version = 72
---------------------------------------------------
I know these worked in earlier API versions. Any guesses?
- Alex
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