[ensembl-dev] recalculated BLAST results

[Healy, Matthew]

If you could make this available on your ftp site, I think it might be of wider usefulness.

________________________________________
From: dev-bounces at ensembl.org [dev-bounces at ensembl.org] On Behalf Of Matthieu Muffato [muffato at ebi.ac.uk]
Sent: Wednesday, October 30, 2013 12:38 PM
To: Ensembl developers list
Subject: Re: [ensembl-dev] recalculated BLAST results

Dear Inti

The comparative genomics team computes all-vs-all blastb for the Ensembl
and UniProt (SwissProt + TREMBL) proteins. I believe this partly covers
the NCBI nr protein database.
However, we only store the e-values, and the data is held internally and
not released. Please let us know if you are interested in a dump of this
table.

Best regards,
Matthieu

On 29/10/13 22:34, Inti pedroso wrote:
> Dear,
> Are there available pre-calculated BLAST (or other sequence comparison software) searches results for any species on Ensembl against the NCBI nr database? If there are, how can I access this results in bulk or programatically.
>
> BW,
> Inti Pedroso

--
Matthieu Muffato, Ph.D.
Ensembl Developer and Ensembl Compara Manager
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus, Hinxton
Cambridge, CB10 1SD, United Kingdom

_______________________________________________
Dev mailing list    Dev at ensembl.org
Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev
Ensembl Blog: http://www.ensembl.info/

This message (including any attachments) may contain confidential, proprietary, privileged and/or private information.  The information is intended to be for the use of the individual or entity designated above.  If you are not the intended recipient of this message, please notify the sender immediately, and delete the message and any attachments.  Any disclosure, reproduction, distribution or other use of this message or any attachments by an individual or entity other than the intended recipient is prohibited.